Events
Will be updated for fall 2025.
Single Cell Seminars have been held since 2016, here only Seminars since Oct 2020 are shown.
17.05.2024
9:00-9:45: Mustafa Ghanizada, Kløverpris lab, ISIM, UCPH. Single-cell RNA sequencing of liver and draining lymph nodes from HIV infected individuals.
9:45-10:30: Jamie Yam Auxillos, Sandelin lab, BRIC, UCPH. A microfluidics platform for spatially resolved analysis of the impact of microenvironmental gradients on cancer cell phenotypes.
Location: Maersk Tower top floor, 7.15.92.
12.04.2024
13:00-13:45: Xiangning Ding, Paludan lab, AU, Deciphering single-cell transcriptome reveals key regulator in immune response against HSV-1 infection in mouse brainstem.
13:45-14:30: Asta Mannstaedt Rasmussen, Pedersed lab, AU, Probabilistic modeling of microRNA activity at the single cell level.
Location: Maersk Tower top floor, 7.15.92.
15.03.2024
9:00-9:45: Ali Altintas, Barres lab, CBMR, UCPH. Effect of let-7 microinjection in mouse blastomeres: an RNA-seq analysis of ‘single’ cells.
9:45-10:30: Jacob Hecksher, Gubra.
Location: Maersk Tower top floor, 7.15.92.
09.02.2024
9:00-9:45: Zehra Caldwell Abay-Nørgaard, Kirkeby lab, reNEW, UCPH, Unravelling the development of the arcuate nucleus using stem cells.
9:45-10:30: Laura Wolbeck, Khodosevich lab, BRIC, UCPH. Differential impact of maternal inflammation on neuronal progenitors in the developing neocortex.
Location: Maersk Tower top floor, 7.15.92.
12.01.2024
9:00-9:45: Wenning Zheng, ISIM, UCPH, CITE-seq and T cell receptor sequencing reveal potential local precursor of skin-resident CD8 T cells in health and disease.
Location: Maersk Tower top floor, 7.15.92.
15.12.2023
9:00-9:45: Carmelo Bellardita, Department of Neuroscience, UCPH, Microphagens reside in the muscle spindle to control sensorimotor function at millisecond timescale.
9:45-10:30: Xian Xin, Khodosevich lab, BRIC, UCPH, Unraveling Epileptogenesis Mechanisms via scRNA-seq from Scn2ap.A263V Mouse Model.
Location: Maersk Tower top floor, 7.15.92.
17.11.2023
9:00-9:45: Gaurav Rathore, Kirkeby lab, reNEW, UCPH, Studying Early Human Neural regionalisation in a Microfluidic Model with Single-Cell Transcriptomics.
9:45-10:30: Migle Mikutenaite, Weischenfeldt lab, BRIC, UCPH, Tumour-microenvironment interactions in prostate cancer disease trajectories.
Location: Maersk Tower top floor, 7.15.92.
13.10.2023
9:00-9:45: Dorottya Ralbovszki, Vanessa Hall lab, Department of Veterinary and Animal Sciences, UCPH, Single cell mapping the evolution of the spatial processing centre in the brain.
9:45-10:30: Albin Sandelin, BRIC, UCPH, A microfluidics workflow for spatial analysis of microenvironmental gradient impact on cancer cell phenotypes.
Location: Maersk Tower top floor, 7.15.92.
24.02.2023
PhD student Frederik Nørby Friis Sørensen: Network analysis of epileptic TSC2 pediatric patients.
Postdoc Mette Q. Ludwig: Transcriptional states underlying cagrilintide signaling in the dorsal vagal complex.
Location: Faculty Club at Panum (Mødelokale 16.6.16) and on Zoom.
27.01.2023
Postdoc Bernd Coester: Intersecting Neuroscience and snRNA sequencing to add projection identities to neuronal data sets.
Assistant Professor Navneet: A Vasistha:Single-cell analysis of myelin-neuron interactions in 22q11.2 model of psychiatric illness.
Location: Faculty Club at Panum (Mødelokale 16.6.16) and on Zoom.
16.12.2022
PhD student Katarina Dragicevic: Hiding in plain sight: uncovering diseased interneuron subtypes in a 15q.13.3+/- schizophrenia mouse model.
PhD student Petar Todorov: How to use your single-cell data to select spatial probes.
Location: Faculty Club at Panum (Mødelokale 16.6.16) and on Zoom.
25.11.2022
09:00 – 09:30: Postdoc Josephine Deleuran Hendriksen, Weichenfeldt Lab, Biotech Research and Innovation Centre, University of Copenhagen. Clonal evolution of glioblastoma during therapy at single cell resolution.
09:30 – 09:45: Coffee, croissants and discussion.
09:45 – 10:30: Postdoc Malte Thodberg, Hansen Lab, Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen. Using multimodal single cell sequencing of the human liver to dissect the genetic basis of diabetes and obesity.
Location: Meeting room 16.6.16 in the Faculty Club and zoom.
28.10.2022
09:00 – 09:30: PhD student Grzegorz Jerzy Maciag, Jensen Lab, Novo Nordisk Foundation Center for Stem Cell Biology. STAT signalling promotes the emergence of regenerative cell states in ulcerative colitis.
09:30 – 09:45: Coffee, croissants and discussion.
09:45 – 10:30: Postdoc René Lemcke, Kornum Lab, Department of Neuroscience, University of Copenhagen. Molecular Consequences of Influenza A infections On Hypothalamic Cell Populations.
Location: Room 16.6.16 in the Faculty Club and zoom.
28.09.2022
09:00 – 09:30: Postdoc Cecilia Engel Thomas, Pers Lab, Novo Nordisk Foundation Center for Basic Metabolic Research. Single-cell Profiling of the Human Lateral Hypothalamic Area.
09:30 – 09:45: Coffee, croissants and discussion.
09:45 – 10:30: Sales Manager Mike Day, Parse Biosciences. Evercode: Single Cell at Unprecedented Scale.
Location: Maersk Tower top floor, 7.15.92 and zoom
30.05.2022
09:15 – 10:00: Postdoc Jenny Brown, Novo Nordisk Foundation Center for Basic Metabolic Research, Pers lab. Brain Glucose Sensing.
10:00 – 10:15: Coffee and croissants.
10:15 – 11:00: Postdoc Rasmus Rydbirk, Biotech Research & Innovation Centre, Khodosevich lab. Neurodegeneration of the lentiform nucleus in parkinsonian diseases at the single cell level.
29.04.2022
15:00-16:00: Francisco Quintana, Brigham and Women's Hospital. Role of astrocytes in the control of CNS inflammation.
Location: zoom.
24.03.2022
15:00-16:00: Jeffrey Moffitt, Harvard Medical School. Tissue atlases with MERFISH.
Location: zoom.
25.02.2022
09:00-10:00: Jun Hee Lee, University of Michigan Medical School. See Everything Quickly through SEQ-Scope -- Microscopic Examination of Spatial Transcriptome.
Location: zoom.
28.01.2022
09:00-09:40: Joanna Kalucka, Department of Biomedicine, AU. Angiogenesis revisited: role of endothelial heterogeneity in health and disease.
10:00-10:40: Jeroen Aerts, Resolve Biosciences. Every cell matters: subcellular spatial and contextual transcriptomics.
Location: zoom.
01.12.2021
09:00 – 09:40: Nagendra Prasad Palani, Scheele Lab, Novo Nordisk Foundation Center for Basic Metabolic Research. Differentiating human adipocytes share trajectories across brown and white depots.
10:00 – 10:40: Vesalius: high-resolution in silico anatomization of Spatial Transcriptomic data using Image Analysis.
Location: Patrick Martin, Won Lab, Biotech Research & Innovation Centre.
29.10.2021
09:00-10:00: Peter Kharchenko, Harvard Medical School. Analysis of multi-cellular expression programs from inter-individual variation.
Location: meeting room 7.15.92 at Maersk Building 15th floor and zoom.
27.08.2021
09:00-09:40: Viktor Petukhov, BRIC, KU. Cacoa – new tool for comparison of single-cell data between health and disease
10:00-10:40: Nicola Meola, Bio-Techne. RNAscopeTM HiPlex v2: Enhancing Spatial Mapping In Your Research...and more stories
Location: Faculty Lounge 7.15.107B at Maersk Building 15th floor and zoom.
28.05.2021
15:00-16:00: Seth Blackshaw, Johns Hopkins University. Building and Rebuilding the Hypothalamus.
Location: zoom.
30.04.2021
09:00-10:00: Itai Yanai, New York University Grossman School of Medicine. Exploring tumorigenesis and host-pathogen interactions using single-cell and spatial transcriptomics.
Location: zoom.
26.03.2021
09:00-10:00: John Wahlgren, 10X Genomics. 10X Genomics product update and roadmap 2021-2022
Location: zoom.
26.02.2021
09:00-10:00: Igor Adameyko, Karolinska Institutet/Medical University of Vienna. Evolutionary conserved and non-conserved mechanisms of a cell fate choice
Location: zoom.
29.01.2021
09:00-10:00: Rong Fan, Yale University. NGS-based Spatial Omics Profiling at Cellular Level.
Location: zoom.
27.11.2020
09:00-10:00: Holger Heyn, CRG Barcelona, Spain. Towards a high-quality human cell atlas: Applications and Guidelines
Location: zoom.
30.10.2020
09:00-10:00: Roman Romanov, Medical University of Vienna, Austria. Designlogic of molecular and spatial cellular attributes during hypothalamus development.
Location: Zoom.